A more plausible conception of race, one that is consistent with how careful philosophers and geneticists use the term, recognises that: When humans began leaving Africa around 75,000 years ago, they dispersed across a much greater range of environments than they had previously inhabited. The humans that settled in different geographic regions subsequently came under different selection pressures (e.g. temperature, seasonality, altitude). Natural barriers such as oceans (e.g. the Atlantic), deserts (e.g. the Sahara) and mountain ranges (e.g. the Himalayas) impeded gene flow between different populations for substantial periods of time. When there is limited gene flow between populations that have come under different selection pressures, we would expect them to gradually diverge from one another over via the processes of genetic drift and natural selection.
Detecting Natural Selection
The methodological challenge of distinguishing adaptive directional selection from the confounding effects of migration, population structure, and drift in genetic data.
Ancient DNA has transformed our understanding of population history, but its potential to reveal as much about human evolutionary biology has not been realized because of limited sample sizes and the difficulty of distinguishing sustained rises in allele frequency increasing fitness—directional selection—from shifts due to migrations, population structure, or non-adaptive purifying or stabilizing selection. Here we present a method for detecting directional selection in ancient DNA time-series data that tests for consistent trends in allele frequency change over time, and apply it to 15,836 West Eurasians (10,016 with new data). Previous work has shown that classic hard sweeps driving advantageous mutations to fixation have been rare over the broad span of human evolution8,9. By contrast, in the past ten millennia, we find that many hundreds of alleles have been affected by strong directional selection. We also document one-standard-deviation changes on the scale of modern variation in combinations of alleles that today predict complex traits. This includes decreases in predicted body fat and schizophrenia, and increases in measures of cognitive performance. These effects were measured in industrialized societies, and it remains unclear how these relate to phenotypes that were adaptive in the past. We estimate selection coefficients at 9.7 million variants, enabling study of how Darwinian forces couple to allelic effects and shape the genetic architecture of complex traits.